Jayaramaiah, R.H., Singh, P.K., Kaur, S., Maisnam, P., Singh, B.K. Microbiome genomics and climate resilience. Genomic Solutions for Breeding Climate-Resilient Crops (Accepted)
Singh, P.K., Martins, C., Jayaramaiah, R.H., Egidi, E., Macdonald, C., Wang, J., Xiong, C., Batista, B., Qui, G., Reich, P.B., Delgado-Baquerizo, M., Singh, B.K. (2026). Plant phylogenetic relatedness explains host microbiome assembly.
Plant and Soil ·
doi.org/10.1007/s11104-026-08318-9
Liu, H., Martins, C.S.C., Zhou, G., Jayaramaiah, R.H., Zhang, H., Li, J.,
Singh, P.K., Yan, Z., Wang, J., Reich, P., Eisenhauer, N., Delgado-Baquerizo, M., Singh, B.K. The diversity of soil protists shapes ecosystem functions under climate change.
Global Change Biology ·
doi.org/10.1111/gcb.70692
Zhang, Z., Sharma, M., O'Connor, J.,
Singh, P.K., Waite, I., Mickan, B., Bolan, N., Abbott, L., Jenkins, S., Gurung, SK. (2025). Co-application of struvite with phosphorus-solubilising bacteria enhances soil microbial activity and bioavailable phosphorus in alkaline soil.
Journal of Environmental Management ·
doi.org/10.1016/j.jenvman.2025.128408
Rajapakshe, O.L., Gurung, S.K., O'Connor, J., Mickan, B.S.,
Singh, P.K., Waite, I.S., De Mascio, C., Abbott, L.K., Jenkins, S.N. (2025). Lauric acid controls nitrogen release and inhibits nitrification in wastewater-enriched compost.
Journal of Environmental Management ·
doi.org/10.1016/j.jenvman.2025.126778
Zheng, Y., Abbott, L., Bolan, N.,
Singh, P., Jenkins, S., Mickan, B. (2025). Evaluating the potential of digestate-loaded biochar in improving soil biological health and plant nutrition with less greenhouse gas emissions.
Environmental Pollution ·
dx.doi.org/10.1016/j.envpol.2025.126431
Li, J., Liu, H., Wang, J., Macdonald, C.,
Singh, P., Cong, V., Klein, M., Baquerizo, M., Singh, B. (2025). Enhancing plant drought resistance through specific enrichments in plant microbiomes.
Cell Host & Microbe ·
doi.org/10.1016/j.chom.2025.05.002
Ahmed, S.,
Singh, P., Middleton, J., Merritt, D., Jenkins, S., Nichols, P. (2025). Impact of seed maturation on the morphological characteristics, nutritional elements, microbiome community composition, and germinability of subterranean clover seeds.
Grass and Forage Science ·
doi.org/10.1111/gfs.12725
Zarezadeh, S., Zheng, Y., Jenkins, S.N., Mercer, G.D., Moheimani, N.R.,
Singh, P.K., Mickan, B.S. (2025). Sustainable soil management in agriculture under drought stress: utilizing waste-derived organic soil amendments and beneficial impacts on soil bacterial communities.
Applied Soil Ecology ·
doi.org/10.1016/j.apsoil.2025.105870
Gurung, S.K., Mickan, B.S., Middleton, J.,
Singh, P.K., Jenkins, S.N., Rengel, Z., Siddique, K.H.M., Solaiman, Z.M. (2024). Manure-derived black soldier fly frass enhanced the growth of chili plants (
Capsicum annuum L.) and altered rhizosphere bacterial community.
Applied Soil Ecology ·
doi.org/10.1016/j.apsoil.2024.105605
Birnbaum, C., Dearnaley, J., Egidi, E., Frew, A., Hopkins, A., Powell, J., Aguilar-Trigueros, C., Liddicoat, C., Albornoz, F., Heuck, M.K., Dadzie, F.A., Florence, L.,
Singh, P.K., Mansfield, T., Rajapaksha, K., Stewart, J., Rallo, P., Peddle, S.D., Chiarenza, G. (2023). Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia.
New Phytologist ·
doi.org/10.1111/nph.19440
Singh, P.K., Egidi, E., Macdonald, C., Singh, B. (2023). Host selection has a stronger impact on leaf microbiome assembly compared to land-management practices.
Journal of Sustainable Agriculture and Environment ·
doi.org/10.1002/sae2.12043
Sengupta, S.,
Singh, P.K., Ganguli, S. (2022). Insights into the core bacterial consortia of root endophytes in two cultivated varieties of rice in West Bengal.
Environmental and Experimental Biology ·
doi.org/10.22364/eeb.20.19
Ganguli, S.,
Singh, P.K., Pal, A. (2020). Transcriptome based identification of small RNA in plants: the need for robust prediction algorithms. In: Guleria, P. (Ed.),
Plant Small RNA: Biogenesis, Regulation and Application, Elsevier ·
doi.org/10.1016/B978-0-12-817112-7.00004-3
Kundu, A.*,
Singh, P.K.*, Dey, A., Ganguli, S., Pal, A. (2019). Complex molecular mechanisms underlying MYMIV-resistance in
Vigna mungo revealed by comparative transcriptome profiling.
Scientific Reports (equal contributions) ·
doi.org/10.1038/s41598-019-45383-w
Ghosh, U.D., Ghosh, M.M., Singh, P.K., Ganguli, S. (2019). Comparative profiling of the rhizospheric soil of Typha angustifolia L. from heavy metal contaminated and free sites reveals the selective abundance of γ-Proteobacteria and β-Proteobacteria. Indian Journal of Experimental Biology
Singh, P.K., Ganguli, S., Pal, A. (2018). Functions of long non-coding RNAs in plants: a riddle to explore.
The Nucleus ·
doi.org/10.1007/s13237-018-02494
Singh, P.K., Ganguli, S., Pal, A. (2018). Screening and identification of putative long noncoding RNAs from transcriptome data of a high yielding blackgram (
Vigna mungo) cv. T9.
Data in Brief ·
doi.org/10.1016/j.dib.2018.01.043
Singh, P.K., Patel, A., Ganguli, S., Pal, A. (2017). Molecular modeling and simulation of three important components of plant–pathogen interaction cascade in
Vigna mungo.
Bioinformation ·
doi.org/10.6026/97320630013323
Ganguli, S., Rahaman, S., Bera, A.R., Vishal, V., Malik, S., Roopalakshmi, K.,
Singh, P.K. (2017). Rhizospheric metagenome of the terrestrial mangrove fern
Acrostichum from Indian Sunderbans.
Genomics Data ·
doi.org/10.1016/j.gdata.2017.09.001
Sengupta, S., Ganguli, S.,
Singh, P.K. (2017). Metagenome analysis of the root endophytic microbial community of Indian rice (
O. sativa L.).
Genomics Data ·
doi.org/10.1016/j.gdata.2017.02.010
Singh, P.K., Ghoshal, J.R., Ganguli, S., Basu, P., Vishal, V., Bera, A.R., Pandey, A., Banik, R. (2016). Identification of conserved regulatory motif signatures in human miRNA upstream regions.
2016 International Conference on Bioinformatics and Systems Biology (BSB), IEEE Xplore ·
doi.org/10.1109/BSB.2016.7552128
Ganguli, S., Gupta, M.K., Basu, P., Banik, R.,
Singh, P.K., Vishal, V., Bera, R.A., Hirak, J., Das, S.G. (2014). Intelligent Access to Sequence and Structure Databases (IASSD) — an interface for accessing information from major web databases.
Bioinformation ·
doi.org/10.6026/97320630010764
Singh, P.K., Banik, R., Chakraborty, H.J., Das, S.G., Ganguli, S., Datta, A. (2014). Identifying overlapping phylogenetic and geographic roots of HIV-1 evolution through computational analyses.
International Letters of Natural Sciences ·
doi.org/10.18052/www.scipress.com/ILNS.7.23